| Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas TA Knijnenburg, L Wang, MT Zimmermann, N Chambwe, GF Gao, ... Cell reports 23 (1), 239-254. e6, 2018 | 904 | 2018 |
| The cancer genome atlas comprehensive molecular characterization of renal cell carcinoma CJ Ricketts, AA De Cubas, H Fan, CC Smith, M Lang, E Reznik, R Bowlby, ... Cell reports 23 (1), 313-326. e5, 2018 | 816 | 2018 |
| Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling S Flygare, K Simmon, C Miller, Y Qiao, B Kennedy, T Di Sera, EH Graf, ... Genome biology 17, 1-18, 2016 | 176 | 2016 |
| Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression MA Busby, C Stewart, CA Miller, KR Grzeda, GT Marth Bioinformatics 29 (5), 656-657, 2013 | 166 | 2013 |
| A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018 | 143 | 2018 |
| Integrated genomic analysis of the ubiquitin pathway across cancer types Z Ge, JS Leighton, Y Wang, X Peng, Z Chen, H Chen, Y Sun, F Yao, J Li, ... Cell reports 23 (1), 213-226. e3, 2018 | 95 | 2018 |
| Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy BEP Ostrander, RJ Butterfield, BS Pedersen, AJ Farrell, RM Layer, ... NPJ genomic medicine 3 (1), 22, 2018 | 77 | 2018 |
| Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response J Ghosh, KM Buckley, SV Nair, DA Raftos, C Miller, AJ Majeske, T Hibino, ... Developmental & Comparative Immunology 34 (3), 235-245, 2010 | 73 | 2010 |
| BIO:: Phylo-phyloinformatic analysis using perl RA Vos, J Caravas, K Hartmann, MA Jensen, C Miller BMC bioinformatics 12, 1-9, 2011 | 61 | 2011 |
| Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics RJP Bonnal, J Aerts, G Githinji, N Goto, D MacLean, CA Miller, H Mishima, ... Bioinformatics 28 (7), 1035-1037, 2012 | 43 | 2012 |
| Bam. Iobio: a Web-based, real-time, sequence alignment file inspector CA Miller, Y Qiao, T DiSera, B D'astous, GT Marth Nature methods 11 (12), 1189-1189, 2014 | 38 | 2014 |
| Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web CA Miller, J Anthony, MM Meyer, G Marth Bioinformatics 29 (3), 381-383, 2013 | 36 | 2013 |
| An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification CA Miller, KM Buckley, RL Easley, LC Smith BMC genomics 11, 1-19, 2010 | 29 | 2010 |
| A comparison of clinical FISH and sequencing based FISH estimates in multiple myeloma: an Mmrf commpass analysis C Miller, J Yesil, M Derome, A Donnelly, J Marrian, K McBride, ... Blood 128 (22), 374, 2016 | 21 | 2016 |
| Genomic basis of multiple myeloma subtypes from the MMRF CoMMpass study S Skerget, D Penaherrera, A Chari, S Jagannath, DS Siegel, R Vij, ... medRxiv, 2021.08. 02.21261211, 2021 | 11 | 2021 |
| SpTie1/2 is expressed in coelomocytes, axial organ and embryos of the sea urchin Strongylocentrotus purpuratus, and is an orthologue of vertebrate Tie1 and Tie2 ME Stevens, J Dhillon, CA Miller, C Messier-Solek, AJ Majeske, D Zuelke, ... Developmental & Comparative Immunology 34 (8), 884-895, 2010 | 9 | 2010 |
| Gene.iobio: an interactive web tool for versatile, clinically-driven variant interrogation and prioritization T Di Sera, M Velinder, A Ward, Y Qiao, S Georges, C Miller, A Pitman, ... Scientific Reports 11 (1), 20307, 2021 | 5 | 2021 |
| Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools A Ward, MA Karren, T Di Sera, C Miller, M Velinder, Y Qiao, FM Filloux, ... Journal of clinical and translational science 1 (6), 381-386, 2017 | 5 | 2017 |
| Genepanel. iobio-an easy to use web tool for generating disease-and phenotype-associated gene lists A Ekawade, M Velinder, A Ward, T DiSera, C Miller, Y Qiao, G Marth BMC Medical Genomics 12, 1-4, 2019 | 3 | 2019 |
| PREDICTORS OF SATISFACTION WITH AGING IN PLACE: THE ROLE OF HOME-AND COMMUNITY-BASED SERVICES F Wen, C Stewart, G Armstrong, G Burke, L Land, C Miller, B Clifton Innovation in Aging 1 (suppl_1), 895-895, 2017 | 1 | 2017 |
