| An updated classification of Orchidaceae MW Chase, KM Cameron, JV Freudenstein, AM Pridgeon, G Salazar, ... Botanical journal of the Linnean Society 177 (2), 151-174, 2015 | 982 | 2015 |
| DNA data and Orchidaceae systematics: a new phylogenetic classification MW Chase, KM Cameron, RL Barrett, JV Freudenstein Orchid conservation 69 (89), 32, 2003 | 576 | 2003 |
| A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values JI Davis, DW Stevenson, G Petersen, O Seberg, LM Campbell, ... Systematic Botany 29 (3), 467-510, 2004 | 232 | 2004 |
| What does morphology tell us about orchid relationships?—A cladistic analysis JV Freudenstein, FN Rasmussen American Journal of botany 86 (2), 225-248, 1999 | 197 | 1999 |
| An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy JV Freudenstein, C van den Berg, DH Goldman, PJ Kores, M Molvray, ... American Journal of Botany 91 (1), 149-157, 2004 | 179 | 2004 |
| An overview of the phylogenetic relationships within Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae) C van den Berg, DH Goldman, JV Freudenstein, AM Pridgeon, ... American Journal of Botany 92 (4), 613-624, 2005 | 164 | 2005 |
| Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms CF Barrett, JV Freudenstein, J Li, DR Mayfield-Jones, L Perez, JC Pires, ... Molecular Biology and Evolution 31 (12), 3095-3112, 2014 | 157 | 2014 |
| Taxonomy and classification VSFT Merckx, JV Freudenstein, J Kissling, MJM Christenhusz, RE Stotler, ... Mycoheterotrophy: the biology of plants living on fungi, 19-101, 2013 | 151 | 2013 |
| Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification JV Freudenstein, MW Chase Annals of botany 115 (4), 665-681, 2015 | 138 | 2015 |
| Ancestral gene flow and parallel organellar genome capture result in extreme phylogenomic discord in a lineage of angiosperms RA Folk, JR Mandel, JV Freudenstein Systematic biology 66 (3), 320-337, 2017 | 136 | 2017 |
| Biodiversity and the species concept—lineages are not enough JV Freudenstein, MB Broe, RA Folk, BT Sinn Systematic Biology 66 (4), 644-656, 2017 | 135 | 2017 |
| Analysis of mitochondrial nad1b-c intron sequences in Orchidaceae: utility and coding of length-change characters JV Freudenstein, MW Chase Systematic Botany, 643-657, 2001 | 116 | 2001 |
| Taxonomic revision of Passiflora subgenus Tetrapathea including the monotypic genera Hollrungia and Tetrapathea (Passifloraceae), and a new species of Passiflora SE Krosnick, AJ Ford, JV Freudenstein Systematic Botany 34 (2), 375-385, 2009 | 101 | 2009 |
| Oldest fossil flowers of hamamelidaceous affinity, from the Late Cretaceous of New Jersey. WL Crepet, KC Nixon, EM Friis, JV Freudenstein Proceedings of the National Academy of Sciences 89 (19), 8986-8989, 1992 | 100 | 1992 |
| Evolution of mycoheterotrophy in plants: a phylogenetic perspective V Merckx, JV Freudenstein New Phytologist, 605-609, 2010 | 98 | 2010 |
| An integrative approach to delimiting species in a rare but widespread mycoheterotrophic orchid CF Barrett, JV Freudenstein Molecular Ecology 20 (13), 2771-2786, 2011 | 95 | 2011 |
| Spurious 99% bootstrap and jackknife support for unsupported clades MP Simmons, JV Freudenstein Molecular Phylogenetics and Evolution 61 (1), 177-191, 2011 | 90 | 2011 |
| Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences DH Goldman, JV Freudenstein, PJ Kores, M Molvray, DC Jarrell, ... Systematic Botany 26 (3), 670-695, 2001 | 89 | 2001 |
| Characters, states and homology JV Freudenstein Systematic biology 54 (6), 965-973, 2005 | 74 | 2005 |
| Amino acid vs. nucleotide characters: challenging preconceived notions MP Simmons, H Ochoterena, JV Freudenstein Molecular Phylogenetics and Evolution 24 (1), 78-90, 2002 | 71 | 2002 |
