Derek Severi Lundberg
Derek Severi Lundberg
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Defining the core Arabidopsis thaliana root microbiome
DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ...
Nature 488 (7409), 86-90, 2012
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
SL Lebeis, SH Paredes, DS Lundberg, N Breakfield, J Gehring, ...
Science 349 (6250), 860-864, 2015
Practical innovations for high-throughput amplicon sequencing
DS Lundberg, S Yourstone, P Mieczkowski, CD Jones, JL Dangl
Nature methods 10 (10), 999-1002, 2013
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
MR Wagner, DS Lundberg, TG Del Rio, SG Tringe, JL Dangl, ...
Nature communications 7 (1), 12151, 2016
Genomic features of bacterial adaptation to plants
A Levy, I Salas Gonzalez, M Mittelviefhaus, S Clingenpeel, ...
Nature genetics 50 (1), 138-150, 2018
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
MR Wagner, DS Lundberg, D Coleman‐Derr, SG Tringe, JL Dangl, ...
Ecology letters 17 (6), 717-726, 2014
Bacterial populations in juvenile maize rhizospheres originate from both seed and soil
D Johnston-Monje, DS Lundberg, G Lazarovits, VM Reis, MN Raizada
Plant and Soil 405, 337-355, 2016
Natural selection on the Arabidopsis thaliana genome in present and future climates
M Exposito-Alonso, HA Burbano, O Bossdorf, R Nielsen, D Weigel
Nature 573 (7772), 126-129, 2019
The Pseudomonas syringae Type III Effector HopAM1 Enhances Virulence on Water-Stressed Plants
AK Goel, D Lundberg, MA Torres, R Matthews, C Akimoto-Tomiyama, ...
Molecular plant-microbe interactions 21 (3), 361-370, 2008
Arabidopsis thaliana and Pseudomonas pathogens exhibit stable associations over evolutionary timescales
TL Karasov, J Almario, C Friedemann, W Ding, M Giolai, D Heavens, ...
Cell host & microbe 24 (1), 168-179. e4, 2018
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
J Regalado, DS Lundberg, O Deusch, S Kersten, T Karasov, K Poersch, ...
The ISME Journal, 1-15, 2020
Learning microbial interaction networks from metagenomic count data
S Biswas, M Mcdonald, DS Lundberg, JL Dangl, V Jojic
Journal of Computational Biology 23 (6), 526-535, 2016
ProDeGe: a computational protocol for fully automated decontamination of genomes
K Tennessen, E Andersen, S Clingenpeel, C Rinke, DS Lundberg, J Han, ...
The ISME journal 10 (1), 269-272, 2016
HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing
DA Cambiagno, AJ Giudicatti, AL Arce, D Gagliardi, L Li, W Yuan, ...
Molecular plant 14 (3), 426-439, 2021
Root-exuded coumarin shapes the root microbiome
DS Lundberg, PJPL Teixeira
Proceedings of the National Academy of Sciences 115 (22), 5629-5631, 2018
Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant
O Shalev, TL Karasov, DS Lundberg, H Ashkenazy, ...
Nature ecology & evolution 6 (4), 383-396, 2022
Methods for genotyping-by-sequencing
BA Rowan, DK Seymour, E Chae, DS Lundberg, D Weigel
Genotyping: Methods and Protocols, 221-242, 2017
MT-Toolbox: improved amplicon sequencing using molecule tags
SM Yourstone, DS Lundberg, JL Dangl, CD Jones
BMC bioinformatics 15, 1-7, 2014
The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere
TL Karasov, M Neumann, A Duque-Jaramillo, S Kersten, I Bezrukov, ...
BioRxiv, 828814, 2019
Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
DS Lundberg, P Pramoj Na Ayutthaya, A Strauß, G Shirsekar, WS Lo, ...
Elife 10, e66186, 2021
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